isodiscrepancy
--------------

.. function:: RNADiscrepancy.isodiscrepancy((nt1_left, nt1_right), (nt2_left, nt2_right))

 Compute the isodiscrepancy between two pairs of
 :py:class:`~RNADiscrepancy.rna.Nucleotide`.

 Full documentation: :py:func:`RNADiscrepancy.measures.isodiscrepancy`

 :rtype: float

discrepancy
-----------


.. function:: RNADiscrepancy.discrepancy([nt1_1, nt1_2, ...], [nt2_1, nt2_2, ...]))

 Compute the discrepancy between two RNA modules.
 They are list of :py:class:`~RNADiscrepancy.rna.Nucleotide`
 aligned in the same order

 Full documentation: :py:func:`RNADiscrepancy.measures.discrepancy`

 :rtype: float


rawdata2nucleotide
-------------------

.. function:: RNADiscrepancy.rawdata2nucleotide(nucleotide_name, atoms_names, atoms_elements, positions)

 Format raw nucleotide data to Nucleotide objects (see :py:class:`RNADiscrepancy.rna.Nucleotide`).

 Full documentation: :py:func:`RNADiscrepancy.utilities.rawdata2nucleotide`

 :rtype: :py:class:`~RNADiscrepancy.rna.Nucleotide`

cif2nucleotides
---------------

.. function:: RNADiscrepancy.cif2nucleotides(path_cif, to_find, author_chain, author_position, add_virtual)

Extract positions from a CIF file into Nucleotide objects (see :py:class:`RNADiscrepancy.rna.Nucleotide`).

Full documentation: :py:func:`RNADiscrepancy.cif2nucleotides`

:rtype: list[:py:class:`~RNADiscrepancy.rna.Nucleotide`]