`RNADiscrepancy.rna`

Module Contents

Classes

`Atom`
`Nucleotide`

API

class RNADiscrepancy.rna.Atom(name, element, x, y, z, virtual=False)

Initialization

property position

distance(other)

__eq__(other)

__neq__(other)

__str__()

__repr__()

class RNADiscrepancy.rna.Nucleotide(name, atoms)

Bases: dict

property ribose_fulcrum

property neighbors_fulcrum

property heavy_atoms_residue

property center_heavy_atoms_residue

property rotation_matrix

Returns a rotation matrix towards the reference orientation with sugar at the bottom WCF edge on +x+y quadrant

Args:: self
Returns:: 3x3 matrix

add_virtual_atoms_from_ref(): Adds virtual atoms from reference