Index

_

__all__ (in module RNADiscrepancy) (in module RNADiscrepancy._version) __commit_id__ (in module RNADiscrepancy._version) __eq__() (RNADiscrepancy.rna.Atom method)

__neq__() (RNADiscrepancy.rna.Atom method) __repr__() (RNADiscrepancy.rna.Atom method) __str__() (RNADiscrepancy.rna.Atom method) __version__ (in module RNADiscrepancy._version) __version_tuple__ (in module RNADiscrepancy._version)

A

add_virtual_atoms_from_ref() (RNADiscrepancy.rna.Nucleotide method)

angle_rotation() (in module RNADiscrepancy.geometry) Atom (class in RNADiscrepancy.rna)

B

best_mean_centered_rotation() (in module RNADiscrepancy.geometry) best_rotation() (in module RNADiscrepancy.geometry) best_rotation_translation() (in module RNADiscrepancy.geometry) built-in function RNADiscrepancy.cif2nucleotides() RNADiscrepancy.discrepancy() RNADiscrepancy.isodiscrepancy() RNADiscrepancy.rawdata2nucleotide()

C

c1prime_distance_difference() (in module RNADiscrepancy.measures) c1prime_translation() (in module RNADiscrepancy.measures) center_heavy_atoms_residue (RNADiscrepancy.rna.Nucleotide property)

cif2nucleotides() (in module RNADiscrepancy.utilities) commit_id (in module RNADiscrepancy._version) cross3_2d() (in module RNADiscrepancy.geometry)

D

discrepancy() (in module RNADiscrepancy.measures)

distance() (RNADiscrepancy.rna.Atom method)

H

heavy_atoms_residue (in module RNADiscrepancy.references) (RNADiscrepancy.rna.Nucleotide property)

I

INSTALL_MSG (in module RNADiscrepancy.graphics)

isodiscrepancy() (in module RNADiscrepancy.measures)

M

module RNADiscrepancy RNADiscrepancy._version RNADiscrepancy.geometry RNADiscrepancy.graphics RNADiscrepancy.measures RNADiscrepancy.references RNADiscrepancy.rna RNADiscrepancy.utilities

N

neighbors_fulcrum (RNADiscrepancy.rna.Nucleotide property)

Nucleotide (class in RNADiscrepancy.rna) nucleotide (in module RNADiscrepancy.references)

P

plot_positions_names() (in module RNADiscrepancy.graphics)

plots_compare_first() (in module RNADiscrepancy.graphics) position (RNADiscrepancy.rna.Atom property)

R

rawdata2nucleotide() (in module RNADiscrepancy.utilities) ref_heavy_atoms_positions (in module RNADiscrepancy.references) ribose_fulcrum (RNADiscrepancy.rna.Nucleotide property) RMSD() (in module RNADiscrepancy.geometry) RNADiscrepancy module RNADiscrepancy._version module RNADiscrepancy.cif2nucleotides() built-in function RNADiscrepancy.discrepancy() built-in function RNADiscrepancy.geometry module RNADiscrepancy.graphics module

RNADiscrepancy.isodiscrepancy() built-in function RNADiscrepancy.measures module RNADiscrepancy.rawdata2nucleotide() built-in function RNADiscrepancy.references module RNADiscrepancy.rna module RNADiscrepancy.utilities module rotation_align_2D_points() (in module RNADiscrepancy.geometry) rotation_matrix (RNADiscrepancy.rna.Nucleotide property)

T

triangle_xy_sign() (in module RNADiscrepancy.geometry)

V

version (in module RNADiscrepancy._version)

version_tuple (in module RNADiscrepancy._version)